Package gopenmol-3.00-1007

With gOpenMol small molecules, and to lesser extent protein structures, as well as the chemical properties, total electron densities and molecule orbitals of small molecules can be visualized and analyzed. Data from a variety of computational chemistry programs such as TurboMole, Gaussian, Gamess, etc., can be analyzed if the output files from these programs have been converted into the .plt-file format understood by gOpenMol. Moreover, dynamics done with, e.g., InsightII can be visualized and a short mpeg animation of the dynamics files generated. Copyright info (from the website): The program is distributed free of charge for academic installations and academic use. If you have used gOpenMol for your publication, please use the following references: * Laaksonen, L. (1992) A graphics program for the analysis and display of molecular dynamics trajectories. J. Mol. Graph. 10: 33-34. * Bergman, D.L., Laaksonen, L., and Laaksonen, A. (1997) Visualization of solvation structures in liquid mixtures. J. Mol. Graph. Model. 15: 301-306.

The main program is called "gopenmol" and is in the default fink command PATH. Utility programs are in /sw/lib/gOpenMol-3.00/bin so you have to either add that to your PATH or call the programs using the full pathname. May not run correctly over remote X11