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Package hmmer-2.2g-3

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10.9/x86_64
 
 
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10.6/x86_64
 
 
 
10.6/i386
2.2g-3
 
 
 
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Description:   Profile HMMs for biological sequence analysis (2.2g-3)
HMMER - profile hidden Markov models for biological sequence analysis Version 2.2 (August 2001) Copyright (C) 1992-2001 Washington University School of Medicine ------------------------------------------------------------------ o About this software... HMMER is an implementation of profile HMM methods for sensitive database searches using multiple sequence alignments as queries. Basically, you give HMMER a multiple sequence alignment as input; it builds a statistical model called a "hidden Markov model" which you can then use as a query into a sequence database to find (and/or align) additional homologues of the sequence family.
Usage Hints:   
To demonstrate hmmer, run: /sw/share/hmmer/demo/hmmsearch.sh You may manually download any HMM libraries to /data/hmmerdb from: ftp://ftp.genetics.wustl.edu/pub/eddy/Pfam/ If you want to use another location for your databases set the environment variable HMMERDB. For more information, see: http://hmmer.wustl.edu/ http://pfam.wustl.edu/
Section:   sci
Maintainer:   Richard Graul <graulATpharmakosDOTcom>
Website:   http://hmmer.wustl.edu/
License:   GPL
Info-File:   dists/10.4/stable/main/finkinfo/sci/hmmer.info
CVS log, Last Changed: Fri, 17 Feb 2012 15:39:32 (UTC)

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