Package pfamserver-7.6-3

Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains.

**************************************** For pfamserver to work, you must edit /etc/httpd/httpd.conf. Uncomment the \"AddHandler cgi-script .cgi\" line, the \"AddType text/html .shtml\" line, and the \"AddHandler server-parsed .shtml\" line. Add the following two sections: <Directory /sw/share/pfamserver> Options FollowSymLinks ExecCGI Includes AllowOverride None Order allow,deny Allow from all </Directory> <VirtualHost *> ServerName pfam.your.domain ScriptAlias /cgi-bin/ /sw/share/pfamserver/cgi-bin/ DocumentRoot /sw/share/pfamserver/docs </VirtualHost> Also, you will have to add the host pfam.your.domain to NetInfo. You can do this through the NetInfo GUI or the shell. For example, the following three lines will assign the name to your local host: sudo niload hosts / <<EOF 127.0.0.1 pfam.your.domain EOF where \"your.domain\" is the name of your domain. Then restart apache: sudo apachectl restart **************************************** To demonstrate pfamserver, point your browser to: http://pfam.your.domain/ **************************************** For more information, see:" http://pfam.wustl.edu/ http://hmmer.wustl.edu/