|Description:||RNA database search with structure queries (1.1-10)|
Sequence database searching with RNA structure queries. RSEARCH aligns an RNA query to target sequences, using SCFG algorithms to score both secondary structure and primary sequence alignment simultaneously. It's slow, but somewhat more capable of finding significant remote RNA structure homologies than sequence alignment methods like BLAST. (By "slow", we mean, you really need a substantial computing cluster to do any serious work with it; a typical single search of a metazoan genome may take a few thousand CPU hours.) This install will rename rsearch to rnasearch to avoid conflict with ccp4's rsearch.
|Maintainer:||W. G. Scott <wgscottATusersDOTsourceforgeDOTnet>|
CVS log, Last Changed: Mon, 01 Aug 2011 19:19:34 (UTC)
(*) = Unsupported distribution.